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Kazuhiro Aoki
Senior Research Scientist

Telephone: 706-583-5551
Fax: 706-542-4412

Short Biography
Research Interests

Short Biography:

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Research Interests:

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Publications: Author's Last Name: Aoki

Journal Articles
Book Chapters are listed at the bottom of this page.

M. Tiemeyer, K. Aoki, J. Paulson, R.D. Cummings, W.S. York, N.G. Karlsson, F. Lisacek, N.H. Packer, M.P. Campbell, N.P. Aoki, A. Fujita, M. Matsubara, D. Shinmachi, S. Tsuchiya, I. Yamada, M. Pierce, R. Ranzinger, H. Narimatsu, K.F. Aoki-Kinoshita. 2017. GlyTouCan: An accessible glycan structure repository. Glycobiology 27: 915-919. PMID:28922742

WB Struwe, S. Agravat, KF Aoki-Kinoshita, MP Campbell, CE Costello, A. Dell, T Feizi, SM Haslam, NG Karlsson, KH Khoo, D. Kolarich, Y. Liu, R. McBride, MV Novotny, NH Packer, JC Paulson, E. Rapp, R. Ranzinger, PM Rudd, DF Smith, M. Tiemeyer, L. Wells, WS York, J. Zaia, C Kettner. 2016. The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets. Glycbiology Sept 26(9): 907-910. PMID:27654115

N Mehta, M Porterfield, WB Struwe, C Heiss, P Azadi, PM Rudd, M Tiemeyer, K Aoki. 2016. Mass Spectrometric Quantification of N-Linked Glycans by Reference to Exogenous Standards. Journal of Proteome Research 15(9): 2969-2980. PMID:27432553

K Aoki-Kinoshita, S Agravat, NP Aoki, S Arpinar, RD Cummings, A Fujita, N Fujita, GM Hart, SM Haslam, T Kawasaki, M Matsubara, KW Moremen, S Okuda, M Pierce, R Ranzinger, T Shikanai, D Shinmachi, E Solovieva, Y Suzuki, S Tsuchiya, I Yamada, WS York, J Zaia, H Narimatsu. 2016. GlyTouCan 1.0--The international glycan structure repository. Nucleic Acids Res 44: D1237-D1242. PMID:26476458

H Allam, K Aoki, BB Benigno, JF McDonald, SG Mackintosh, M Tiemeyer, KL Abbot. 2015. Glycomic Analysis of Membrane Glycoproteins with Bisecting Glycosylation from Ovarian Cancer Tissues Reveals Novel Structures and Functions. J Proteome Res 14: 434-446. PMID:25437919

S Kurz, K Aoki, C Jin, NG Karlsson, M Tiemeyer, I Wilson, K Pashinger. 2015. Targetted release and fractionation reveal glucuronylated and sulfated N- and O-glycans in larvae of dipteran insects. J Proteomics 126: 172-188. PMID:26047717

A Varki, RD Cummings, M Aebi, NH Packer, PH Seeberger, JD Esko, P Stanley, GJ Hart, A Darvill, T Kinoshita, JH Prestegard, RL Schnaar, HH Freeze, JD Marth, CR Bertozzi, ME Etzler, M Frank, JF Vliegenthart, T Lutteke, S Perez, E Bolton, P Rudd, J Paulson, M Kanehisa, P Toukach, KF Aoki-Kinoshita, A Dell, H Narimatsu, W York, N Taniguchi, S Kornfeld. 2015. Symbol Nomenclature for Graphical Representations of Glycans. Glycobiology 25: 1323-1324. PMID:26543186

L Boccuto, K Aoki, H Flanagan-Steet, CF Chen, X Fan, F Bartel, M Petukh, A Pittman, R Saul, A Chaubey, E Alexov, M Tiemeyer, R Steet, CE Schwartz. 2014. A mutation in a ganglioside biosynthetic enzyme, ST3GAL5, results in salt & pepper syndrome, a neurocutaneous disorder with altered glycolipid and glycoprotein glycosylation . Hum Mol Genet 23(2): 418-433. PMID:24026681

WS York, S. Agravat, KF Aoki-Kinoshita, R. McBride, MP Campbell, CE Costello, A. Dell, T Feizi, SM Haslam, N.G. Karlsson, KH Khoo, D. Kolarich, Y. Liu, M.V. Novotny, NH Packer, JC Paulson, E. Rapp, R Razinger, PM Rudd, DF Smith, WB Struwe, M. Tiemeyer, L. Wells, J. Zaia, C Kettner. 2014. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology 24(5): 402-406. PMID:24653214

M Porterfield, P Zhao, H Han, J Cunningham, K Aoki, DD Von Hoff, MJ Demeure, JM Pierce, M Tiemeyer, L Wells. 2014. Discrimination between Adenocarcinoma and normal pancreatic ductal fluid by proteomic and glycomic analysis. J Proteome Res Feb 7; 13(2): 395-407. PMID:24328148

MP Campbell, R Ranzinger, T Lutteke, J Mariethoz, CA Hayes, J Zhang, Y Akune, KF Aoki-Kinoshita, D Damerell, G Carta, WS York, SM Haslam, H Narimatsu, PM Rudd, NG Karlsson, NH Packer, F Lisacek. 2014. Toolboxes for a standardized and systematic study of glycans.. BMC Bioinformatics Suppl 1: -S9. PMID:24564482

T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, Y Yamamoto, A Yamaguchi, S Okamoto, S Kawano, JD Kim, Y Wang, H Wu, Y Kano, H Ono, H Bono, S Kocbek, J Aerts, Y Akune, E Antezana, K Arakawa, B Aranda, J Baran, J Bolleman, RJ Bonnal, PL Buttigieg, MP Campbell, YA Chen, H Chiba, PJ Cock, KB Cohen, A Constantin, G Duck, M Dumontier, T Fujisawa, T Fujiwara, N Goto, R Hoehndorf, Y Igarashi, H Itaya, M Ito, W Iwasaki, M Kalas, T Katoda, T Kim, A Kokubu, Y Komiyama, M Kotera, C Laibe, H Lapp, T Lutteke, MS Marshall, T Mori, H Mori, M Morita, K Murakami, M Nakao, H Narimatsu, H Nishide, Y Nishimura, J Nystrom-Persson, S Ogishima, Y Okamura, S Okuda, K Oshita, NH Packer, P Prins, R Ranzinger, P Rocca-Serra, S Sansone, H Sawaki, SH Shin, A Splendiani, F Strozzi, S Tadaka, P Toukach, I Uchiyama, M Umezaki, R Vos, PL Whetzel, I Yamada, C Yamasaki, R Yamashita, WS York, CM Zmasek, S Kawamoto, T Takagi. 2014. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics 5(1): -5. PMID:24495517

K. Talabnin, K. Aoki, P. Saichua, S. Wongkham, S. Kaewkes, G.J. Boons, B. Sripa, M. Tiemeyer. 2013. Stage-specific expression and antigenicity of glycorpotein glycans isolated from the human liver fluke, Opisthorchis viverrini. Int. J. Parasitol 43: 37-50. PMID:23174105

Y. Xiang, X. Zhang, D.B. Nix, T. Katoh, K. Aoki, M. Tiemeyer, Y. Wang. 2013. Regulation of protein glycosylation and sorting by the Golgi matrix proteins GRASP55/65. Nature Commun. 4: 1659-. PMID:23552074

N.E. Mbua, X. Li, H.R. Flanagan-Steet, L. Meng, K. Aoki, K.W. Moremen, M.A. Wolfert, R. Steet, G.J. Boons. 2013. Selective exo-enzymatic labeling (SEEL) of N-glycans of living cells by recombinant ST6Gal. . Angewandte 52: 13012-13015. PMID:24129959

M. Porterfield, Z Peng, H Haiyong, J Cunningham, K. Aoki, D Von, J Demeure, M. Pierce, M. Tiemeyer, L. Wells. 2013. Discrimination between Adenocarcinoma and Normal Pancreatic Ductal Fluid by Proteomic and Glycomic Analysis. J. Proteome Res. In press.

A.V. Nairn, K. Aoki, M. Dela, M. Porterfield, J.M. Lim, M. Kulik, J.M. Pierce, L. Wells, S. Dalton, M. Tiemeyer, K.W. Moremen. 2012. Regulation of glycan structures in murine embryonic stem cells: Combined transcript profiling of glycan-related genes and glycan structural analysis. J. Biol. Chem. 287: 37835-37856. PMID:22988249

G. Kadirvel, S.A. Machado, C. Korneli, E. Collins, P. Miller, K.N. Bess, K. Aoki, M. Tiemeyer, N. Bovin, D.J. Miller. 2012. Porcine sperm bind to specific 6-sialylated biantennary glycans to form the oviduct reservoir. Biol. Reprod. 87: 147-. PMID:23115267

E.R. Sturgill, K. Aoki, P.H. Lopez, D. Colacurcio, K. Vajn, I. Lorenzini, S. Majic, W.H. Yang, M. Heffer, M. Tiemeyer, J.D. Marth, R.L. Schnaar. 2012. Biosynthesis of the major brain gangliosides GD1a and GT1b. Glycobiology 22: 1289-1301. PMID:22735313

S.H. Stainaker, K. Aoki, J.M. Lim, M. Porterfield, M. Liu, J.S. Satz, S. Buskirk, Y. Xiong, P. Zhang, K.P. Campbell, H. Hu, D. Live, M. Tiemeyer, L. Wells. 2011. Glycomic analyses of mouse models of congenital muscular dystrophy. J. Biol. Chem. 286: 21180-21190. PMID:21460210

M.C. Reilly, K. Aoki, Z.A. Wang, M.L. Skowyra, M. Williams, M. Tiemeyer, T.L. Doering. 2011. A xylosylphosphotransferase of Cryptococcus neoformans acts in protein O-glycan synthesis. J. Biol. Chem. 286: 26888-26899. PMID:21606487

S. Baas, M. Sharrow, V. Kotu, M. Middleton, K. Nguyen, H. Flanagan-Steet, K. Aoki, M. Tiemeyer. 2011. Sugar-free frosting, a homolog of SAD kinase, drives neural-specific glycan expression in the Drosophila embryo. Development 138: 553-563. PMID:21205799

S.H. Stalnaker, S. Hashmi, J-M Lim, K. Aoki, M. Porterfield, G. Gutierrez-Sanchez, J. Wheeler, J.M. Ervasti, C. Bergmann, M. Tiemeyer, L. Wells. 2010. Site-mapping and characterization of O-glycan structures on alpha-dystroglycan isolated from rabbit skeletal muscle. J. Biol. Chem. 285: 24882-24891. PMID:20507986

S.H. Stalnaker, S. Hashmi, J-M Lim, K. Aoki, M. Porterfield, G. Gutierrez-Sanchez, J. Wheeler, J.M. Ervasti, C. Bergmann, M. Tiemeyer, L. Wells. 2010. Site-mapping and characterization of O-glycan structures on alpha-dystroglycan isolated from rabbit skeletal muscle. J. Biol. Chem. 285: 24882-24891. PMID:20507986

J.M. Lim, K. Aoki, P.M. Angel, D. Garrison, D. King, M. Tiemeyer, C. Bergmann, L. Wells. 2009. Mapping glycans onto specific N-linked glycosylation sites of Pyrus communis PGIP redefines the interface for EPG-PGIP interactions. J. Proteome Res. 8: 673-680. PMID:19072240

K.L. Abbott, K. Aoki, J.-M. Lim, M. Porterfield, R. Johnson, R.M. O'Regan, L. Wells, M. Tiemeyer, M. Pierce. 2008. Targeted glycoproteomic identification of biomarkers for human breast carcinoma. J. Proteome Res. 7: 1470-1480. PMID:18271524

L. Nimrichter, M.M. Burdick, K. Aoki, W. Laroy, M.A. Fierro, S.A. Hudson, C.E. Von, R.J. Cotter, B.S. Bochner, M. Tiemeyer, K. Konstantopoulos, R.L. Schnaar. 2008. E-selectin receptors on human leukocytes. Blood 112: 3744-3752. PMID:18579791

N.H. Packer, C.W. Von der Lieth, K.F. Aoki-Kinoshita, C.B. Lebrilla, J.C. Paulson, R. Ramon, P. Rudd, R. Sasisekharan, N. Taniguchi, W.S. York. 2008. Frontiers in glycomics: Bioinformatics and biomarkers in disease. Proteomics 8: 8-20. PMID:18095367

K. Aoki, M. Porterfield, S.S. Lee, B. Dong, K. Nguyen, K.H. McGlamry, M. Tiemeyer. 2008. The diversity of O-linked glycans expressed during Drosophila melanogaster development reflects stage-and tissue-specific requirements for cell signaling. J. Biol. Chem. 283: 30385-30400. PMID:18725413

K. Aoki, M. Perlman, J.M. Lim, R. Cantu, L. Wells, M. Tiemeyer. 2007. Dynamic developmental elaboration of N-linked glycan complexity in the Drosophila melanogaster embryo. J. Biol. Chem. 282: 9127-9142. PMID:17264077

K. Koles, J.M. Lim, K. Aoki, M. Porterfield, M. Tiemeyer, L. Wells, V. Panin. 2007. Identification of N-glycosylated proteins from the central nervous system of Drosophila melanogaster. Glycobiology 17: 1388-1403. PMID:17893096

Book Chapters

M. Sharrow, K. Aoki, S. Baas, M. Poeterfield, M. Tiemeyer. 2009. Genetic and structural analysis of the glycoprotein and glycolipid glycans of Drosophila melanogaster. In: Handbook of Glycomics (R. Cummings and J.M. Pierce, eds.), pp. 329-345. Academic Press.

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